PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_41209_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 210aa    MW: 23949 Da    PI: 9.6219
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_41209_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.1e-1170156394
                     EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      +l +s+v  + +l+lp k + ++  +++        + + ++++W++ +  + ++g   + ++Wk+F+ +n+Lk+gD +vF+l++ s+++ ++
  Neem_41209_f_1  70 MILAKSHVQPLYQLMLPAKMT-AIlpSLE--I---PAFLTYKSKEWQMLYHGEVCKG-KRFDTNWKKFATDNKLKVGDGCVFELIECSSEKIKF 156
                     567788888888999999987.5533222..2...35677899*******5555544.47999********************99767665554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-1264151IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-1564151IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-1266160No hitNo description
SMARTSM010190.005768160IPR003340B3 DNA binding domain
PROSITE profilePS508639.44668162IPR003340B3 DNA binding domain
PfamPF023621.1E-968155IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MPFASAFQRI RVLRAWLFVL KTSALGSSSG KGVKNAQFRD QQFPNASKHI AIELQGDEFW  60
PLSGKPYFTM ILAKSHVQPL YQLMLPAKMT AILPSLEIPA FLTYKSKEWQ MLYHGEVCKG  120
KRFDTNWKKF ATDNKLKVGD GCVFELIECS SEKIKFRVNK LKVGDGCVFE LIECSSEKIK  180
FRVQILRGDI PSKFEDKTNG ESENMPIIIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024956135.11e-65B3 domain-containing protein Os04g0386900-like
TrEMBLA0A067E2E35e-60A0A067E2E3_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006484742.14e-65(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1865456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.15e-06B3 family protein