PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4056_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 412aa    MW: 46501.2 Da    PI: 8.2954
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4056_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002323346223
                    EET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                    +Cp   Cgk+Fs++ +   H+r+H
  Neem_4056_f_1 323 RCPheGCGKRFSSHKYAIIHQRVH 346
                    69999*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035531299321IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.445322351IPR007087Zinc finger, C2H2
SMARTSM003550.046322346IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-7322346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280324346IPR007087Zinc finger, C2H2
SuperFamilySSF576672.27E-10340380No hitNo description
Gene3DG3DSA:3.30.160.602.3E-6347358IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0016352376IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.946352381IPR007087Zinc finger, C2H2
PROSITE patternPS000280354376IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.7E-4359374IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.604.9E-10375394IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MQHESNNRTE TNEEFNSSSI PLENSEVRSK ECVAADLCSV GTKEEAVSSS VTRIEVDQPS  60
VLSVEGCLEV PRGIFVEEDV GADGMQLENQ TTEANMDQLV SHSSLRLEEN QPIPASVGAC  120
SEASNGIHAV ENVSVDTTDN EQQKQNQTTN VTNKEPKPNS PARRNQPTPA LIRKYSRTRK  180
ESSSTEKLCN DNEVCLSKDK REMDCNEPTV EDPSSSARKG RKRKRELEQI TENKCDGSEF  240
IRSPCEGLRP RAGKNAANKS EVDVRKMAKE KPATKVMKKP SNVSVPCQDK KKTLKEGRHR  300
CDLDGCRMSF ETKRELSLHK NNRCPHEGCG KRFSSHKYAI IHQRVHDDER PLKCPWKGCS  360
MSFKWAWART EHIRVHTGER PYQCKFEGCG LSFRCCNIWI RVTRILGPKR PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-4229939423118Lysine-specific demethylase REF6
6a58_A1e-4229939423118Lysine-specific demethylase REF6
6a59_A1e-4229939423118Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217225RKGRKRKRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436450.11e-171probable lysine-specific demethylase ELF6
RefseqXP_006485645.11e-171probable lysine-specific demethylase ELF6
TrEMBLA0A067E5S20.0A0A067E5S2_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5PYG01e-174A0A2H5PYG0_CITUN; Uncharacterized protein
STRINGXP_006485645.11e-170(Citrus sinensis)
STRINGXP_006436450.11e-170(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-54C2H2 family protein