PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_40433_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 274aa    MW: 30701.1 Da    PI: 8.9716
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_40433_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.46e-1419932597
                    TT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 25 eh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    ++      ++kk+ ++t++l+ +sg +W v +  + +++  ++  GW eFvk + L+e+D++ Fk++g+s f   v +f
  Neem_40433_f_1 19 AIpekvvkNLKKKLPVTVSLKGPSGFTWVVGI--TTRDNILYFCHGWPEFVKNHFLQENDILFFKYNGDSLF--DVLMF 93
                    4444444456677*******************..9999999*************************998877..66555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.6E-4696IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-161994IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-181994IPR015300DNA-binding pseudobarrel domain
PfamPF023625.7E-112088IPR003340B3 DNA binding domain
PROSITE profilePS5086311.9562096IPR003340B3 DNA binding domain
CDDcd100174.49E-133394No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MAGDICFSPL KLPIKLLEAI PEKVVKNLKK KLPVTVSLKG PSGFTWVVGI TTRDNILYFC  60
HGWPEFVKNH FLQENDILFF KYNGDSLFDV LMFDGQSKCE KAASYFVRKC GHTDHDGEYQ  120
TKRKIGENSV EVIPTSPQCD VGGASPEKTD DDDINKTPAG QPVVSQASSK RVRRVNSSVK  180
PVHTRRSLRS KELCTSFVEN EKAKPVAEPT SFIGDVASSP HYASNRRPVT EDEKKNAMLL  240
AQAALTADSF TVVMRPTHVY RRFYMVTEHF VSIL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434884.12e-91B3 domain-containing protein REM16
RefseqXP_024038869.12e-91B3 domain-containing protein REM16
RefseqXP_024038870.12e-91B3 domain-containing protein REM16
TrEMBLA0A1Q3CHQ82e-91A0A1Q3CHQ8_CEPFO; B3 domain-containing protein
STRINGXP_006434884.19e-91(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-26B3 family protein