PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_39829_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 325aa    MW: 36221 Da    PI: 5.4758
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_39829_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.7e-33137194260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsY++Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Neem_39829_f_1 137 EDGYNWRKYGQKQVKGSENPRSYFKCTFPDCPMKKKVERSL-DGQITEIVYKGSHNHPK 194
                     7****************************************.***************85 PP

2WRKY35.61.9e-11304325122
                     ---SS-EEEEEEE--TT-SS-E CS
            WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                     ldDgy+WrKYGqK+vkg+++pr
  Neem_39829_f_1 304 LDDGYRWRKYGQKVVKGNPNPR 325
                     59*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-28125195IPR003657WRKY domain
SuperFamilySSF1182903.4E-25131195IPR003657WRKY domain
PROSITE profilePS5081123.009131195IPR003657WRKY domain
SMARTSM007742.7E-36136194IPR003657WRKY domain
PfamPF031062.4E-25137193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-13289325IPR003657WRKY domain
SuperFamilySSF1182902.09E-9296325IPR003657WRKY domain
PROSITE profilePS5081116.386299325IPR003657WRKY domain
PfamPF031066.4E-7305325IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MILASPTTDA VNWNNNQQQN NKGEENNFFD FSFQTSQTRA SATASSSSNF LQSSSNIVSV  60
EESVKRQQEP WNFNKPTKQS DFSTENAGVK SEFAPIQSFS LEMGGYQTNA QTSAAPQSDY  120
SQHNQSTMYS REQKRSEDGY NWRKYGQKQV KGSENPRSYF KCTFPDCPMK KKVERSLDGQ  180
ITEIVYKGSH NHPKPQSTRR SSSSQSTQHA TCANSDLSDQ SAGPISNPQT ESFSMQGDSS  240
TSFGEDDFDQ GSPTSNPGGD DNENEPDAKR WKGENDIDGV IGTGSRTVRE PRIVVQTTSD  300
IDILDDGYRW RKYGQKVVKG NPNPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-161381951674WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429505.11e-175probable WRKY transcription factor 33 isoform X1
RefseqXP_006481125.11e-175probable WRKY transcription factor 33 isoform X1
TrEMBLA0A2H5MWH91e-174A0A2H5MWH9_CITUN; Uncharacterized protein
TrEMBLV4SUS11e-174V4SUS1_9ROSI; Uncharacterized protein
STRINGXP_006481125.11e-175(Citrus sinensis)
STRINGXP_006429505.11e-175(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45832755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-82WRKY DNA-binding protein 33