PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_39549_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 266aa    MW: 30152.9 Da    PI: 6.4203
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_39549_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.6e-055476123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ Cg+ F++   L  H+++H
  Neem_39549_f_1 54 YSCSFCGREFKSAQALGGHMNVH 76
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.83E-75181No hitNo description
Gene3DG3DSA:3.30.160.601.9E-45280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.2375481IPR007087Zinc finger, C2H2
SMARTSM003550.00175476IPR015880Zinc finger, C2H2-like
PfamPF139124.2E-65477IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDQQARFFNL PASGSKSSSS ESSFVISNKP WEEEAFAEDA ARRFGGFIWP PRSYSCSFCG  60
REFKSAQALG GHMNVHRRDK ARLKQSPIKS LDHHNYIQNP PVESKIFAYP NKVCSMVYQP  120
NIVNHNSGEL LPSSLSPITV PTVSFTHQKH TYDQSLVLPI FQDYQKMDPS LSCSTSDIRL  180
FSILDSEIEE DHPKKQETRP PEQVDVIKSD HLPTMSLNLQ VGSKIEERIS CKVRTTNDVA  240
PPNFLLKEDM EDNLDLELRL GDQPKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124976229superman protein
2l1o_A1e-124976229Transcriptional regulator SUPERMAN
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-23C2H2 family protein