PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_39218_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 292aa    MW: 31908.5 Da    PI: 9.9503
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_39218_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.2e-066183123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  Neem_39218_f_1 61 FVCEICNKGFQRDQNLQLHRRGH 83
                    89*******************88 PP

2zf-C2H215.35.6e-05137159123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s++k H +++
  Neem_39218_f_1 137 WKCEKCSKKYAVQSDFKAHAKVC 159
                     58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.59E-76083No hitNo description
Gene3DG3DSA:3.30.160.608.4E-66083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121714.1E-56183IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355260102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4125157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.59E-7132157No hitNo description
SMARTSM0035576137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MPVDLENSST ASGEASVSFS SKKKAPPKTT IKKKRSLPGT PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPETSCV HHEPSRALGD  120
LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DFKAHAKVCG TKEYKCDCGS KFSRKFAGDF  180
SRLSMLSYLI PSRRDSFITH RAFCDMLTKE GARAPPNQDE GLVDTDSDSD PKVQPVDLSS  240
PNPPPAAAPA PAPAAPPPAV PQASDAISSS VSPVQTRGNL SSLSVLVLDL GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-30133213364Zinc finger protein JACKDAW
5b3h_F3e-30133213364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425718.11e-136protein indeterminate-domain 2
RefseqXP_006466759.11e-136protein indeterminate-domain 2
RefseqXP_006466760.11e-136protein indeterminate-domain 2
RefseqXP_006466761.11e-136protein indeterminate-domain 2
RefseqXP_024036000.11e-136protein indeterminate-domain 2
RefseqXP_024036001.11e-136protein indeterminate-domain 2
SwissprotQ9LVQ71e-119IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLV4RVX71e-135V4RVX7_9ROSI; Uncharacterized protein
STRINGXP_006466759.11e-136(Citrus sinensis)
STRINGXP_006425718.11e-136(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]