PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_39198_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family G2-like
Protein Properties Length: 320aa    MW: 35467.4 Da    PI: 7.8143
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_39198_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.21.9e-2856107155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kprlrWt +LH+rFv+av+qLG   +AtPk+i+++m+vkgLtl h+kSHLQkYRl
  Neem_39198_f_1  56 KPRLRWTADLHDRFVDAVTQLG---EATPKAIMRTMNVKGLTLFHLKSHLQKYRL 107
                     79*******************4...79***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.52453110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2853108IPR009057Homeodomain-like
SuperFamilySSF466891.36E-1456109IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-2156108IPR006447Myb domain, plants
PfamPF002497.3E-858106IPR001005SANT/Myb domain
PfamPF143792.0E-16126171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MIDELSLNCE KFMYTARMIQ GREGVHEEIH GYHHIQNLNR RGGIGEACVV MTSDPKPRLR  60
WTADLHDRFV DAVTQLGEAT PKAIMRTMNV KGLTLFHLKS HLQKYRLGKQ SGKEMGDSPK  120
DGRAFEVKEA LRAQMEVQSK LHLQVEAEKH LQIRQDAQRR YLAMLDRACK MLSDQFIGGT  180
VVNADSEKCQ GLGTKMPRTY ILDQLGFYTA QSLDVAEVHC LEDDVLPNLH TQRADCSTES  240
CLTSHESSGG LKLKGSPGAG KNRILSLDST TATLLWGEAK IGTQEINLAQ VNPQGITGSL  300
EGGCRQMEKA LGSTKNGSFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A7e-1556109157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-1556109157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-1556109157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-1556109157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467240.11e-151protein PHR1-LIKE 3-like
TrEMBLA0A2H5N6661e-149A0A2H5N666_CITUN; Uncharacterized protein
TrEMBLV4TRR71e-149V4TRR7_9ROSI; Uncharacterized protein
STRINGXP_006467240.11e-150(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17085911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.17e-54G2-like family protein