PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_388_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 371aa    MW: 41959.8 Da    PI: 8.0887
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_388_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.83.9e-32123227199
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefe 91 
                   f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +
  Neem_388_f_1 123 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGElGKDR 219
                   89***************************966778999*************************************************6669999999 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l++ ++r+
  Neem_388_f_1 220 LYIDWRRR 227
                   99999997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-42114230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-30120211IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-26121210No hitNo description
PfamPF023621.3E-29123227IPR003340B3 DNA binding domain
SMARTSM010193.2E-23123228IPR003340B3 DNA binding domain
PROSITE profilePS5086314.776123228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEFGSNREGF CDEDEMGKLN KLHFSYSSPS SPSSSSHYNK TQLLPPLSNN RWEQAQIFDN  60
QHQMGSWLGH RYDLAAAAAA VEDNSRSNEE AASTKVDLMD TSPRNDEDVR SGSASAIEKE  120
HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP LDSSTNEKGL LLNFEDRNGK PWRFRYSYWN  180
SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR GVGELGKDRL YIDWRRRPDA PEQAASFPLQ  240
HRLSFHRSIP WNPLLMRPPV AAMGRDQSQF SQMNNLYNRN SYYNGKAAAK RLRLFGVNMD  300
CPITESDECD ILSSTTIQHA TMTIQPSQVS SSSSQSPLPL RLYNGTSLPS ALPPFDFLNK  360
GKASMSFDSN V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-661182283114B3 domain-containing transcription factor NGA1
5os9_B2e-661182283114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470360.11e-130PREDICTED: B3 domain-containing protein Os03g0120900-like
TrEMBLA0A0D2MKI11e-129A0A0D2MKI1_GOSRA; Uncharacterized protein
STRINGGorai.003G073600.11e-130(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-70B3 family protein