PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_38832_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 148aa    MW: 16824.8 Da    PI: 9.8601
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_38832_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY301.1e-09127148122
                     ---SS-EEEEEEE--TT-SS-E CS
            WRKY   1 ldDgynWrKYGqKevkgsefpr 22 
                     ldDg++WrKYGqK++ g+++pr
  Neem_38832_f_1 127 LDDGFSWRKYGQKDILGARYPR 148
                     59*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081110.533122148IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-7124148IPR003657WRKY domain
SuperFamilySSF1182904.32E-7126148IPR003657WRKY domain
PfamPF031062.7E-6128148IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MGEWEQNNLI SELKQGRELA KQLQIHMNIS SSSHDQTRGM LVQRIIFSYE KALSMLNFTS  60
SSASGEPQIM GPPIESPPSL NGSPRSEDSD RDAKDQEQKD GSRKRKTFPR WTNRVRINPV  120
TGLEGTLDDG FSWRKYGQKD ILGARYPR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106SRKRKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023899975.12e-68probable WRKY transcription factor 53
TrEMBLV4S9487e-64V4S948_9ROSI; Uncharacterized protein
STRINGXP_006422120.11e-64(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-30WRKY family protein