PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_38468_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 265aa    MW: 30070.4 Da    PI: 4.7066
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_38468_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.64.5e-121191651659
                     TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  16 kgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +g    +sY+rCt++   gC+++k+v+r +edp+ +e+tY ++H ++
  Neem_38468_f_1 119 RGCYKRKSYFRCTHKyeqGCRATKQVQRMDEDPQKFETTYISNHSCR 165
                     5666779*******99999*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.11799163IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-12104165IPR003657WRKY domain
SuperFamilySSF1182908.24E-12116165IPR003657WRKY domain
SMARTSM007742.6E-9116166IPR003657WRKY domain
PfamPF031062.8E-11119165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGSQLWSEKL SVNRKKIVKE LVQGKKFAEQ LQVLLQKGFE ADGSASAEDL VVKILRSFTQ  60
TLSVLSSCDD DRVSDDQNLL QQAASCNQAA SCNVSSFSDD RKSEDSGHSM KRPMTKDRRG  120
CYKRKSYFRC THKYEQGCRA TKQVQRMDED PQKFETTYIS NHSCRDIISF PQIITGSDPW  180
SSTVSTDSYV VSMPTEVKQE CKEDTTSDDL SDNLSSLDHI MWEDFMSLQS SEPAPMVSLQ  240
IGSREYSEMG DFGQEFNFDE SHELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-12102165669OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435943.12e-83probable WRKY transcription factor 70
RefseqXP_006486150.12e-83probable WRKY transcription factor 70
TrEMBLA0A2H5PNJ45e-82A0A2H5PNJ4_CITUN; Uncharacterized protein
TrEMBLV4SN495e-82V4SN49_9ROSI; Uncharacterized protein
STRINGXP_006486150.18e-83(Citrus sinensis)
STRINGXP_006435943.18e-83(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-25WRKY DNA-binding protein 70