PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3790_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 351aa    MW: 38266.9 Da    PI: 6.5106
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3790_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-30167225259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+
  Neem_3790_f_2 167 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPGMFIVTYTAEHNHP 225
                    79*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-30156227IPR003657WRKY domain
PROSITE profilePS5081134.888161227IPR003657WRKY domain
SuperFamilySSF1182904.84E-26164227IPR003657WRKY domain
SMARTSM007741.0E-36166226IPR003657WRKY domain
PfamPF031062.2E-25168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEVDWDLHAV VRGCITSSAN TSTTTTTPTT AASFKDDFDS HQSWFSSFTS EQSGHLLSLA  60
DTFEARNAIE ELHELYKPFF PKSHPISPPT TVTSNPISSS SLSSISTSSK NQTQFKLQQQ  120
QQQQQPKQSH VGSVTSSTTA NSHTPRSKRR KNQMKRVCHV PAEGLSSDVW AWRKYGQKPI  180
KGSPYPRGYY RCSSSKGCLA RKQVERNRSD PGMFIVTYTA EHNHPAPTHK NSLAGSTRQK  240
PFTPQNAASD SNKPPSPSSS GVKPTFSSSS PATSMEEDTV PQSTNTESRE LDLLEDEEEE  300
EFGVSDIGIS DDFFVGLEGL GSEDSLPDHF PASFGLPWVA NNAATTAAGG I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-22151228280Disease resistance protein RRS1
5w3x_D6e-22151228280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7089792e-57JF708979.1 Dimocarpus longan WRKY transcription factor 23-2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444950.11e-156WRKY transcription factor 22
RefseqXP_006491188.11e-156WRKY transcription factor 22
TrEMBLA0A067H3961e-155A0A067H396_CITSI; Uncharacterized protein
TrEMBLA0A2H5PGE01e-155A0A2H5PGE0_CITUN; Uncharacterized protein
TrEMBLV4U2E61e-155V4U2E6_9ROSI; Uncharacterized protein
STRINGXP_006491188.11e-156(Citrus sinensis)
STRINGXP_006444950.11e-156(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78102741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-72WRKY family protein