PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_37850_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 347aa    MW: 39647.9 Da    PI: 10.3291
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_37850_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18137227199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp+kf++eh  k  + ++++lede+ +++e  +i +k++    l++GW+ F+ +++L++gD +vF+l++ ++f  +++
  Neem_37850_f_1 137 FVKSMVRSHVYSCFWLGLPRKFCKEHLPK--TVTDMVLEDENAKEFEAVFIGEKTG----LSGGWRAFALDHKLDDGDALVFELVKPKRF--KIH 223
                     89************************534..3458***************555554....************************987888..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  Neem_37850_f_1 224 IIRA 227
                     8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-21128228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-22130228IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-25135226No hitNo description
SMARTSM010192.1E-24137228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717137228IPR003340B3 DNA binding domain
PfamPF023624.7E-17137227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVENNTYEEA RQKRLHENVK KLQELGIEKV SKTLTQITNS DKKSQQRLPK PKSKNVINVV  60
EPRRSSRARN VVVSYRDHVE IDLSPLRKRS RSSSSSWASY LARPIEEVKT ASYEERVQAL  120
KAAEQLQSSL QSGFPSFVKS MVRSHVYSCF WLGLPRKFCK EHLPKTVTDM VLEDENAKEF  180
EAVFIGEKTG LSGGWRAFAL DHKLDDGDAL VFELVKPKRF KIHIIRASYL SSQKHNSNVI  240
GEEEFTSTAK NTRKRGKKLD LQANHAHVDE EMSSPQEPQL DNRKGSEQIK DADQAETNGS  300
ACRKLRKRDN SVDNGQSEKV VLVEEKDKSA SLRSRKKPDP KLFRKKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332345RSRKKPDPKLFRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021636351.11e-122putative B3 domain-containing protein At5g58280 isoform X1
SwissprotQ9FHB21e-72Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A2I4FVJ31e-119A0A2I4FVJ3_JUGRE; putative B3 domain-containing protein At5g58280
STRINGXP_006464978.11e-132(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-58B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]