PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_37618_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 249aa    MW: 27703.4 Da    PI: 6.2434
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_37618_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002788110123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k F ++  L  H++ H
  Neem_37618_f_1  88 FECQYCFKEFANSQALGGHQNAH 110
                     89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-684115No hitNo description
Gene3DG3DSA:3.30.160.609.2E-684114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40688115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEMEASYNVL SHTSDDGENA NSAGSCVEKK LRLFGFELNP SNNNDSSLKG SAEADESVNS  60
SNTASSASEK PSKDKSNSSI GEADEKKFEC QYCFKEFANS QALGGHQNAH KKERMKKKRL  120
QLQARKASLS CYLQPLQNNL SFNYHGSSAW FYDPSCYTPE QFTLYEESQI SFNPYDQDVH  180
LNGSQVSRWY STLPTQTTFQ QDSSMFTLTH TDRSGENRPV IIKPSPLSAP KQSCKSLDLQ  240
LGLSLQSGV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4472391e-32AM447239.1 Vitis vinifera contig VV78X242690.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007044496.11e-120PREDICTED: zinc finger protein 5
TrEMBLA0A061E6R51e-119A0A061E6R5_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOY003281e-119(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.15e-20zinc finger protein 5