PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_36905_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HB-other
Protein Properties Length: 688aa    MW: 77731 Da    PI: 8.7012
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_36905_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.66.8e-062273156
                    HHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox 31 eeLAkklgLterqVkvWFqNrRakek 56
                    e+LA+ l+Lt +qV++WF  +R +ek
  Neem_36905_f_2  2 EDLAAALDLTFKQVRTWFIEKRRREK 27
                    89**********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.511129IPR001356Homeobox domain
CDDcd000861.92E-4127No hitNo description
Gene3DG3DSA:1.10.10.601.0E-5228IPR009057Homeodomain-like
SuperFamilySSF466892.31E-5233IPR009057Homeodomain-like
PROSITE profilePS5082712.273358417IPR018501DDT domain
SMARTSM005711.1E-8358417IPR018501DDT domain
PfamPF027911.2E-9361414IPR018501DDT domain
PfamPF156124.1E-8644683IPR028942WHIM1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MEDLAAALDL TFKQVRTWFI EKRRREKTDN GVVLPSPSSN KLTDTHGRNL GIITGTKMVK  60
GRDSSIHDRD KNTFSCSLKY KHVSSMVGNE HGNKKNAVLL LQDLLTPDYI LKKVFRKDGP  120
PLGVEFDSLP SQAFCCYKGS GNFHPALQES QRANKRRKVP KHDELDCQDF CTNRDPVKKH  180
GMGKGLMTAW RVMNPNGGIY PTGIDTAHRR DNVVPQLSTG RSQKPPLRKK RARQLVSLLK  240
QRRLANKQRN KKKPLIRGRQ VKLDKAESLM KPQREKCELA LEGEISEERL NQIAMLVDDE  300
ELELRELEAG PNLLTCCDHI STKGPHGCSL CRDLLAKFPP NSVKMKQPFG TQPWDSSPEV  360
VKKLFKVFHF LYTYAATVDI CSFTLDEFAQ AFHDKDSLLL GKIHVALLKL LLSDVETELS  420
RGRFAHLSVS CKFLALLHSV SVENQEFFVE FWNKSLNPLT WTEILRQVLV AAGFGSKQGS  480
LRKESLSKEM NLMVKYGLRP GTLKGELFRI LLEQGNDGLK VFQLARSSQI AELNLASTTE  540
EVELLISSTL SSDITLFEKI SPSAYRLRFN SLKETSDYES DTEYSGSVDD NSNDRDTCNS  600
GDDSECDSQI RSQRRLKLVN FHKSKNNMLT VYNEIDESHR GEMWLLGLME GEYSDLTIDE  660
KLNALVALID LVSAGSSIRI EVIILYSA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165912e-32AC216591.1 Populus trichocarpa clone POP002-D23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447893.20.0homeobox-DDT domain protein RLT3 isoform X1
RefseqXP_006469383.10.0homeobox-DDT domain protein RLT3
RefseqXP_006469384.10.0homeobox-DDT domain protein RLT3
RefseqXP_024046871.10.0homeobox-DDT domain protein RLT3 isoform X1
SwissprotF4JRF51e-177RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLV4TL280.0V4TL28_9ROSI; Uncharacterized protein
STRINGXP_006469383.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96382125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.11e-167Homeodomain-like transcriptional regulator