PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3637_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family G2-like
Protein Properties Length: 330aa    MW: 36151 Da    PI: 7.5049
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3637_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like55.71.1e-171757144
        G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44
                   kprl+Wt+eLH+rFveav+qLG   +AtPk+++++m+++gLtl+
  Neem_3637_f_1 17 KPRLKWTTELHQRFVEAVNQLG---EATPKSLMRVMGIPGLTLN 57
                   79*******************4...79***************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-161557IPR009057Homeodomain-like
SuperFamilySSF466897.35E-71656IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-111756IPR006447Myb domain, plants
PfamPF002497.0E-61956IPR001005SANT/Myb domain
PfamPF143791.1E-2294140IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGMQNQNMNL VLSTDAKPRL KWTTELHQRF VEAVNQLGEA TPKSLMRVMG IPGLTLNTDW  60
GKANRLRPAL IISKIIILES ASTDSSFVII RSLQIAQALQ VQMEVQRKLH EQIEVQRHLQ  120
LRIEAQGKYL QSVLKKAQET LAGYTASSVG VELAKAELSQ LVSMVNMGCP SSSLSELTEA  180
GTSSLKDADG KQIRTTICSM ESSLTSSESS GRKEEKQPIN EIGDTHNSNQ TSIELPLMDV  240
HPKDKPCKDS SSSQAGGRKR SESTISDGFC EAQPLAKKLE TLKEKSGDHL RNSGLLGRFD  300
LNSQYQNESE SGSKAIDLNC KGLEQLNGPL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024041826.11e-162myb family transcription factor PHL8 isoform X2
SwissprotF4I2744e-66PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2H5N8W71e-173A0A2H5N8W7_CITUN; Uncharacterized protein
STRINGXP_006438708.11e-161(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.22e-66G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]