PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3631_f_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARF
Protein Properties Length: 918aa    MW: 101252 Da    PI: 6.253
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3631_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23123224199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++
  Neem_3631_f_4 123 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEK 214
                    99****************************97544444..48************************************************..8899 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                     +l+++++r+
  Neem_3631_f_4 215 NQLLLGIRRA 224
                    999****997 PP

2Auxin_resp1219.1e-40249332183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fet++ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Neem_3631_f_4 249 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETDESSVRRYMGTITGISDLDPVRWPNSHWRSVK 332
                    79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-49108252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-42116238IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-21122223No hitNo description
PfamPF023628.6E-22123224IPR003340B3 DNA binding domain
SMARTSM010191.7E-24123225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52123225IPR003340B3 DNA binding domain
PfamPF065071.3E-34249332IPR010525Auxin response factor
SuperFamilySSF542779.81E-7767849No hitNo description
PROSITE profilePS5174520.781776857IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 918 aa     Download sequence    Send to blast
MTQVGKRFAG EKKCLNSELW HACAGPLVSL PPVGSRVVYF PQGHSEQVAA STNKEVDAHI  60
PNYPSLPPQL ICQLHNVTMH ADVETDEVYA QMTLQPLSPQ EQKDVYLLPA ELGTPSKQPT  120
NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDYSQTPPA QELIARDLHD NEWKFRHIFR  180
GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRANRPQTV MPSSVLSSDS  240
MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLAKYV KAVYHTRVSV GMRFRMLFET  300
DESSVRRYMG TITGISDLDP VRWPNSHWRS VKVGWDESTA GERQPRVSLW EIEPLTTFPM  360
YPSPFPLRLK RPWPSGLPSF HALKDGDMSI NSPLMWLQGG IGDPGIQSLN FQGFGVTPWM  420
QPRLDAAIPG LQPDVYQAMA AAALQEMRTV DSSKLASQSL LQFQQPQNVS NGPASLIPRP  480
MLQQSHPQTA FLQSYQENQA SAQAQLLQQQ LQRQHSYNDQ RQQQQQVQQS QQLNQLSVQP  540
QISSVISTLP HLASSSQSQP PTLPSIPPQC QQSNFSDSLV NPIASSDVSS MHTILGSLSQ  600
DGASHLLNSN VSHPIISSAA MLTKQFLSAY CPPAAMLTKQ VTVDNHIPSA VSQCILPQVE  660
QLGTPQSNVS ELANLLPPFP GREYSSYHGS GDPQNNLLFG VSIDSSSLMG QHGLPNLKNI  720
GSENESLSLP FAASNFTNTV GTDFPLNSDM TTSSCVDESG FLQSSENVDQ VNPPNRTFVK  780
VHKSGSFGRS LDISKFSSYD ELRSELARMF GLEGQLEDPQ RSGWQLVFVD RENDVLLLGD  840
DPWHPHMMAA QDFSDPDCII EIEILSPLEV QQMGKEGLSS VSSVPGQRLS NNNCDEYVSR  900
QEMRSSSNGV ASMGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631135347388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4616681e-164KJ461668.1 Dimocarpus longan cultivar Honghezi auxin response factor (ARF6-3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446840.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A067FJQ50.0A0A067FJQ5_CITSI; Auxin response factor
STRINGXP_006446840.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]