PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_35884_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family G2-like
Protein Properties Length: 177aa    MW: 20210.5 Da    PI: 7.1279
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_35884_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.91.9e-126589226
         G2-like  2 prlrWtpeLHerFveaveqLGGsek 26
                    prlrWtp+LH rFv+ave+LGG++ 
  Neem_35884_f_1 65 PRLRWTPDLHLRFVHAVEKLGGQDM 89
                    8*********************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-1261121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDGSGRTEGS KTSPSNQIQQ ESESEENDEH ESNKPKNGGS SSNSTVEENE QKKPSVRPYV  60
RSKMPRLRWT PDLHLRFVHA VEKLGGQDMM ADHRHLVESG DRNIYNLSQL PMLQGYNCQS  120
HSSSFRYGDA SWSAAREYLM RSSCVSRSLI DETRPRLYVS EWVILLMVQI QFGKCLN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429461.13e-73putative Myb family transcription factor At1g14600
RefseqXP_006481085.13e-73putative Myb family transcription factor At1g14600
TrEMBLA0A2H5MXL07e-72A0A2H5MXL0_CITUN; Uncharacterized protein
TrEMBLV4SZQ47e-72V4SZQ4_9ROSI; Uncharacterized protein
STRINGXP_006481085.11e-72(Citrus sinensis)
STRINGXP_006429461.11e-72(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.14e-32G2-like family protein