PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_35172_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 267aa    MW: 29806 Da    PI: 11.3324
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_35172_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-052746120
                    EEETTTTEEESSHHHHHHHH CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                    ++C+ C+k Fs + +L++H+
  Neem_35172_f_1 27 FQCSLCPKAFSESGSLRKHL 46
                    89*****************8 PP

2zf-C2H223.91e-076385123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ Cg +Fsr+ nL++H+r+H
  Neem_35172_f_1 63 FGCTECGSRFSRPGNLTVHLRSH 85
                    56********************9 PP

3zf-C2H213.80.0001891113123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+  F+ +snL++H+ tH
  Neem_35172_f_1  91 FQCTLCSSKFTIRSNLTKHLHTH 113
                     89******************999 PP

4zf-C2H219.91.9e-06119142123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     +kC+ Cg+ Fs+  +L++H  t H
  Neem_35172_f_1 119 FKCTECGRKFSQGGSLRSHVLTkH 142
                     89*****************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.53E-62466No hitNo description
Gene3DG3DSA:3.30.160.601.8E-92558IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.6952762IPR007087Zinc finger, C2H2
SMARTSM003550.442753IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.25E-1657109No hitNo description
Gene3DG3DSA:3.30.160.602.5E-155982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.0866385IPR007087Zinc finger, C2H2
SMARTSM003550.0076385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015715.3966390IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-1383110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015715.27291118IPR007087Zinc finger, C2H2
SMARTSM003550.08691113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-12100144No hitNo description
Gene3DG3DSA:3.30.160.607.1E-13111140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138947.0E-4119142No hitNo description
PROSITE profilePS5015712.528119147IPR007087Zinc finger, C2H2
SMARTSM003550.0014119142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280121142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAVATYLQTY RNTPCTVTGI PRSDRPFQCS LCPKAFSESG SLRKHLLGDL KRHNLTHTGE  60
KAFGCTECGS RFSRPGNLTV HLRSHTGHRP FQCTLCSSKF TIRSNLTKHL HTHTGERPFK  120
CTECGRKFSQ GGSLRSHVLT KHAGNSDATV SPAAWAARGV AIAGRKSRGV ILHDCVSRSS  180
DGRGPWPSLR ALPPRNLFTG TQEALAWRNY DTSLHHRARR SSSAVVVGVL CRLTGWKWNH  240
CRHRRSLCAH RLDRNLWKPL WEPAATL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-272414518183Aart
2i13_B2e-272414518183Aart
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.25e-10transcription factor IIIA