PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_33443_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 214aa    MW: 24694 Da    PI: 6.0448
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_33443_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.6e-1544119186
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     f+k+ltpsdv+k++rlv+pkkfa ++  + ++e+  +l  +d+      v l        ++  +GW++Fvk+n+Lk++D+++F++ +
  Neem_33443_f_2  44 FQKELTPSDVGKLNRLVIPKKFAVKYfpQ-ISESREELAENDKADD---VLL--------VFHDRGWNRFVKENQLKANDTITFYFCD 119
                     99************************843.3334445553443333...333........34468********************653 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-1741117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-1743120IPR015300DNA-binding pseudobarrel domain
CDDcd100176.61E-1543117No hitNo description
PfamPF023622.9E-1344120IPR003340B3 DNA binding domain
SMARTSM010192.1E-1044132IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MIRDGSYASK FAEFLRNHSK SVQKDKFTQM ETHTNGWLMC RQLFQKELTP SDVGKLNRLV  60
IPKKFAVKYF PQISESREEL AENDKADDVL LVFHDRGWNR FVKENQLKAN DTITFYFCDL  120
REHANVTKTF CMIDVIKGES SDSLTEVSNR CADIQVDLQL QLGQRVVHDN NQNRVEEDDK  180
RSKLQAAEEM ELIGPSPISD SETKPLKLFG VAIF
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024953690.11e-94AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_024953691.11e-94AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_024953692.11e-94AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-32RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2H5PWN17e-98A0A2H5PWN1_CITUN; Uncharacterized protein
STRINGXP_006473975.14e-94(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.15e-35RAV family protein