PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3281_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 272aa    MW: 30332.3 Da    PI: 8.5512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3281_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-06114133120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C+ C k+F+r  nL+ H+
  Neem_3281_f_1 114 FSCHVCFKTFNRYNNLQMHM 133
                    89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.66E-5107136No hitNo description
PROSITE profilePS5015710.055114141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4114133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576673.65E-5180218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEPSGFSSDD QSSSFAVSST NHTDIEPLDL FPSGAQNSNE SMLLPSCLHG STEAQLNENP  60
KAFNEEKEDV TVALHIGLPN YSRSSNNPNA SVAAATKQYW IPTPEQILIG LTHFSCHVCF  120
KTFNRYNNLQ MHMWGHGSQY RKGPESLKGT QPRAILGRPC YCCAEGCKNN IENPKAKPLK  180
DFRTLQTHYK RKHGLKPFMC RKCGKFLAVK GDWRTHEKNC GKRWLCVCGS DFKHKRSLKD  240
HIKAFGSGHG PFPPNSFDGV EVLEDASSSL LV
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021285244.11e-156protein TRANSPARENT TESTA 1
SwissprotQ8VWG31e-112TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLA0A061FFX41e-155A0A061FFX4_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRINGEOY159711e-156(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]