PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_31964_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 151aa    MW: 18288.6 Da    PI: 6.7749
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_31964_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002486109123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C++C+ksF+    L +H  + H
  Neem_31964_f_1  86 WRCGYCKKSFRAEKFLDQHFDNrH 109
                     58**********999999976655 PP

2zf-C2H213.30.00024115138123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C++C+ksF+    L +H  + H
  Neem_31964_f_1 115 WRCGYCKKSFRAEKFLDQHFDNrH 138
                     58**********999999976655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.98E-580133No hitNo description
SMARTSM003550.8886109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088109IPR007087Zinc finger, C2H2
SMARTSM003550.88115138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MIESIEFSGC SGILDWRNLK QELGEAHEIH CSRERSRAAW DIIEEYLMPF VDQEQYQISS  60
KCRLHPDNDM FRDQEKHKIH VDINEWRCGY CKKSFRAEKF LDQHFDNRHY TINEWRCGYC  120
KKSFRAEKFL DQHFDNRHYN LLNVVCGPLV P
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476965.14e-57uncharacterized protein LOC102619501
RefseqXP_006476966.14e-57uncharacterized protein LOC102619501
TrEMBLA0A2H5PF638e-56A0A2H5PF63_CITUN; Uncharacterized protein
STRINGXP_006476965.12e-56(Citrus sinensis)
STRINGXP_006440031.11e-55(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.18e-45C2H2-like zinc finger protein