PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_31505_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GeBP
Protein Properties Length: 411aa    MW: 45797.1 Da    PI: 5.2853
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_31505_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573129.21.6e-40181278298
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 
                     lfqrlwseeDeiv+L+G+i++ +k+g +p +d++afy+++kks++++vs+ qlv+KirrLK+K++++ +k  k+g++++fsk+h+qk+++lskk+
  Neem_31505_f_3 181 LFQRLWSEEDEIVVLKGMIEYSTKKGIDPNQDMNAFYDYIKKSLHVDVSRAQLVDKIRRLKRKYENNLEKgLKKGEDQTFSKPHEQKAYDLSKKL 275
                     79********************************************************************99*********************** PP

          DUF573  96 Wgs 98 
                     Wg+
  Neem_31505_f_3 276 WGT 278
                     *95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.8E-35182277IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAPKKANPIE EPPAASLSEG EEEETSSEEE TSSEDEAEED TQEPSQPSSP PRQQTQKQTA  60
VKKPEITTVT SASPPRQQTQ KQTAVKKPEI TTVTSQSKSS SSEVSGSESE SESEPDATPK  120
PIASKPMEET PKATKSRSKP AAKRPNETEE TPKDSKRLKK KGGDADLDEE KKPGEDTKKQ  180
LFQRLWSEED EIVVLKGMIE YSTKKGIDPN QDMNAFYDYI KKSLHVDVSR AQLVDKIRRL  240
KRKYENNLEK GLKKGEDQTF SKPHEQKAYD LSKKLWGTES ISGVIESAAK SNGKVRKNQN  300
QKGNIKSLAF LKAELIDGAK DVEKMDVDNK EGDGVDKSVN MKEFHKNFGM AGLEEFVIND  360
GLDMIGAVKK AELEEKWKKL QIAQLELFLQ RNELINDQAK LTLDALKSSG N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449140.11e-176hypothetical protein CICLE_v10015528mg
TrEMBLV4UDY21e-176V4UDY2_9R
STRINGPOPTR_0009s09150.11e-84(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-33DNA-binding storekeeper protein-related transcriptional regulator