PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3104_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 290aa    MW: 32781.5 Da    PI: 8.8856
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3104_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000215375123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + F++   L  H+++H
  Neem_3104_f_3 53 YSCSFCRREFRSAQALGGHMNVH 75
                   99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-65079No hitNo description
PROSITE profilePS5015711.2195380IPR007087Zinc finger, C2H2
SMARTSM003550.00985375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEQAGYWMWT KRKHSLSSHF PSPNRYDDSW EEQAFAEDAA GPLGGCIWPP RSYSCSFCRR  60
EFRSAQALGG HMNVHRRDRA RLKQSSSSPQ NEIQHNQYQN NHNNLQNPFA SLSFQYPSQL  120
CTVVYNPNPN SDPAVIPSPS SPSRVSAPAT QVNFPEKTFL HPLSSPIVQQ EQHKSSPNSS  180
PQSWSNLVAD KYYNISDLKN EGKENSKILG SACRVTADYV KTDLSVSLNL VVRRTRPTLS  240
DDKEEAVGCK RRRMETSSLP FFLKPSCKNN TVCESLKDVS SPFFKEAHHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124875229superman protein
2l1o_A1e-124875229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480886.11e-124zinc finger protein 10
TrEMBLA0A067EAZ51e-124A0A067EAZ5_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006480886.11e-124(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-27zinc-finger protein 10