PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3104_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 194aa    MW: 21730.1 Da    PI: 4.8918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3104_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123153123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C  C++ Fs+   L  H++ H
  Neem_3104_f_2 31 YTCAFCKRGFSNAQALGGHMNIH 53
                   9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-62957No hitNo description
Gene3DG3DSA:3.30.160.601.7E-42955IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1773158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEAKPQADIE KSNQILWSSV ELQGSSHVKS YTCAFCKRGF SNAQALGGHM NIHRKDRAKL  60
RQFAEENLLS LDIARTKPID DSDLSEDTSV VILESSEEKS CTPKRPSTLS REDDCTPKSK  120
DDIEEFHQLP FFTDEPSSSA EMKASSSSSY GKHEDKGLQL QLDHSLAQIE LDLELRLGPE  180
PPHDRSATST KEFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654353.11e-53PREDICTED: transcriptional regulator TAC1-like
TrEMBLA5B2R14e-52A5B2R1_VITVI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-21C2H2 family protein