PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_30843_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 334aa    MW: 37077.5 Da    PI: 7.828
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_30843_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94e-061741123
                    EEETTTTEEESSHHHHHHHHHH..T CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                    +kCp C k F+rk++L  H+++  H
  Neem_30843_f_1 17 HKCPACYKQFKRKDHLIEHMKMsyH 41
                    79******************98666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0841741IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.03E-51738No hitNo description
PROSITE profilePS5015712.1131746IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-71738IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801941IPR007087Zinc finger, C2H2
SMARTSM003551404666IPR015880Zinc finger, C2H2-like
SMARTSM0035522081101IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.420.105.3E-18128179IPR012337Ribonuclease H-like domain
SuperFamilySSF530982.53E-8131173IPR012337Ribonuclease H-like domain
SuperFamilySSF530982.53E-8205238IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.105.3E-18211238IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MATEQDPPKT RTTSTRHKCP ACYKQFKRKD HLIEHMKMSY HSVHQPKCAV CQKHCQSFES  60
LREHLTGPLA KANCAMVFSH QGCNLCMKTF DDPDSLSKHK EACSLSAPVP LGTAIPKKIS  120
GLVDKNGTGR AVAIDCEMVG GGSDGSLDLC ARVCLVDEDE NVIFHAYVQP QIPVINYRYI  180
PALYVFGFSK TVILDYSAHY SCISIDLFRS EVTGLTEEHL KDAMPVNEVR DKILEILYNG  240
ESIGRLRLDG GKGRLLGELF SLLHPAPFSK TFGEVSVVNF FTIFRLHFIS SPDQASQKQS  300
SIAINYLQGV KAISDVVTSE HNSGNFTCRQ RTLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021280594.11e-110apoptosis-enhancing nuclease isoform X1
TrEMBLA0A061DPU71e-109A0A061DPU7_THECC; Exonuclease family protein isoform 2 (Fragment)
TrEMBLA0A061DXU41e-108A0A061DXU4_THECC; Exonuclease family protein isoform 1
STRINGEOX948381e-109(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125322