PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_30360_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 316aa    MW: 35625.9 Da    PI: 10.595
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_30360_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.71.5e-10233252322
                     -SS-EEEEEEE--TT-SS-E CS
            WRKY   3 DgynWrKYGqKevkgsefpr 22 
                     D+y+WrKYGqK++kgs++pr
  Neem_30360_f_2 233 DEYSWRKYGQKPIKGSPHPR 252
                     9******************9 PP

2WRKY521.4e-162663062059
                     S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     f  +YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  Neem_30360_f_2 266 FNWGYYKCSSVrGCPARKHVERCPEDPSMLIVTYEGEHNHS 306
                     6678*****988****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.0E-18184229IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.2E-30219307IPR003657WRKY domain
PROSITE profilePS5081124.593226308IPR003657WRKY domain
SuperFamilySSF1182909.94E-21229306IPR003657WRKY domain
SMARTSM007746.8E-35231307IPR003657WRKY domain
PfamPF031069.5E-20233305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEEVEAANKA AVESCHRVLA LFSQHKDQVQ YRNLAVETGE AVFKFRKVVS LLSNRLGHGR  60
ARKLKKLKPP SSLPQNIFLD SPSFRPVLSP KPLQIIPANF HENPVQLTKN LFDDNQSQAK  120
IPSFKSPLQI APPGLPQNFQ FMHHQQQMQR LQLKLPVHAS PAADAKAAVS AATEQSSQIS  180
QHSRKRCFGR GEEGSVKCST SGKCHCSKRR KHRIKRTIKV PAISNKVADI PPDEYSWRKY  240
GQKPIKGSPH PRLVWAGLNY LYKASFNWGY YKCSSVRGCP ARKHVERCPE DPSMLIVTYE  300
GEHNHSRLQS SQSAHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-162293051271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894273.11e-130probable WRKY transcription factor 74
SwissprotQ9SR074e-93WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBLA0A061F1101e-119A0A061F110_THECC; WRKY DNA-binding protein 21 isoform 1
STRINGevm.model.supercontig_1244.31e-129(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-66WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]