PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3010_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 197aa    MW: 22145 Da    PI: 8.0171
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3010_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000517995117
                   EEETTTTEEESSHHHHH CS
        zf-C2H2  1 ykCpdCgksFsrksnLk 17
                   + C++C+k+F+r  n++
  Neem_3010_f_1 79 FACSICSKTFNRYNNMQ 95
                   78*********998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-47996IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MQVQESSLGI KEEKIEKVTV ALHIGLPNTG DSDIENKDFD TKKEELIDKK SFHGCNSFNK  60
DNRFWIPTPA QILVGPMQFA CSICSKTFNR YNNMQKRAGF AERNATSGNA EATMLLLRSG  120
LKCGKTFAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD HIRSFGKGHS PHPSLDGFED  180
EKECITTGSE DEVANHP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487965.11e-104zinc finger protein WIP3
SwissprotQ9SGD14e-53ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A067F4B81e-103A0A067F4B8_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5QGA61e-102A0A2H5QGA6_CITUN; Uncharacterized protein
STRINGXP_006487965.11e-103(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.12e-55WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]