PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29581_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 211aa    MW: 23786.1 Da    PI: 7.1272
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29581_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY377e-12181201222
                     --SS-EEEEEEE--TT-SS-E CS
            WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                     +Dgy+WrKYGqK vk+s++pr
  Neem_29581_f_1 181 EDGYRWRKYGQKAVKNSPYPR 201
                     8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-12165202IPR003657WRKY domain
SuperFamilySSF1182906.02E-10173203IPR003657WRKY domain
PROSITE profilePS5081113.574175211IPR003657WRKY domain
SMARTSM007740.0033180211IPR003657WRKY domain
PfamPF031062.8E-8181204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSNHEKKASY HYDPFDCNPQ GFNRLGFNFF QDNPSMYNPP TPSENLQAFD PTSYMSFTDC  60
LHGSMDYSSL SRAFDMSCSS SEVITPTMEE SSKKTATVAG ESTAMTTSEN NNPSTPNSSV  120
SSSSNEAGGN EDSGNNKKDK HQKGQEDGDE KSKKVNKPKK EKKQREPRFA FLTKSEIDHL  180
EDGYRWRKYG QKAVKNSPYP RLLFLLNFLH S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7089811e-33JF708981.1 Dimocarpus longan WRKY transcription factor 29-2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437166.12e-83probable WRKY transcription factor 28
RefseqXP_006484858.12e-83probable WRKY transcription factor 28
TrEMBLA0A067F4B56e-82A0A067F4B5_CITSI; Uncharacterized protein
TrEMBLA0A2H5QUL45e-82A0A2H5QUL4_CITUN; Uncharacterized protein
TrEMBLV4TKS76e-82V4TKS7_9ROSI; Uncharacterized protein
STRINGXP_006484858.19e-83(Citrus sinensis)
STRINGXP_006437166.19e-83(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.18e-26WRKY DNA-binding protein 28