PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29025_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 503aa    MW: 55934 Da    PI: 9.33
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29025_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049421443123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C k+F++   L  H r+H
  Neem_29025_f_1 421 HECPICLKVFPTGQALGGHKRSH 443
                     79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.26931IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286936IPR007087Zinc finger, C2H2
PfamPF139122.0E-5932IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-6931No hitNo description
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-6329356No hitNo description
PROSITE profilePS501579.91334361IPR007087Zinc finger, C2H2
SMARTSM003552.8334356IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-10334358IPR007087Zinc finger, C2H2
PROSITE patternPS000280336356IPR007087Zinc finger, C2H2
PfamPF139126.5E-13420443IPR007087Zinc finger, C2H2
SMARTSM003550.079421443IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.954421443IPR007087Zinc finger, C2H2
PROSITE patternPS000280423443IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEEGREFKHV CRFCSKSFPC GRSLGGHMRS HMINNSADDG KFAKKKLSSV KNFITKTNTE  60
INGYGLRENP KKSKKIADSV ADTSLVYEKF CKEGVKGWKT LCGSMKSNSE KERVSNNNSL  120
EDQDSWTSAK LVTESQSDNE TAIPNRRRRS KRRTRYLATA NSSSFSVAND KIGSSSVSEI  180
EIEQEQEEVA MCLMMLSRDL GPIPSGVAES SGNNSLFLEA QIEVENFDGK KKLREKKLES  240
GFVDSENCQF EKRKFEFSAS GISGKGSKTE VSVDLFDKID KVKNSEVELG KNLMKITELN  300
QAQLGSNKNI SGKKKTRDSF NPEFYKDSQK RSKFECASCN KIFQSYQALG GHRASHKKIK  360
GCSASKIDSS ENSIETELSP DPTADSKLIK SINTAINSVN HFALDRDDRA ETSYGALKKR  420
HECPICLKVF PTGQALGGHK RSHLVVGTEA RNPTIVIPEI HNFFDLNLPA PAEEESNAHL  480
GLKPWWISSS SHKHKSIVSL ISN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286224.10.0uncharacterized protein LOC110417943 isoform X1
TrEMBLA0A061FWS60.0A0A061FWS6_THECC; C2H2-like zinc finger protein, putative
STRINGEOY220000.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16472912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-44C2H2-like zinc finger protein