PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_29017_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 644aa    MW: 72093.8 Da    PI: 8.7504
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_29017_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71.1e-18315414198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  e++
  Neem_29017_f_1 315 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-PEGK 407
                     89**************************555566778***************9989999999***9.********************766.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  Neem_29017_f_1 408 LVMGFRK 414
                     7777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-31309420IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-20312415IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-22313414No hitNo description
SMARTSM010191.0E-19315416IPR003340B3 DNA binding domain
PfamPF023624.7E-16315414IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293315416IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MSSSSKICFN KECKELKSDR PRKGWLLRGG EFAELCDRCG CCESCSKRVH CGCIASVNTF  60
TLLDAGGIEC MTCARKNVIS APTPSWPPSL FYQTPLPERM KDFSVKNWTQ LAGSGPVPWR  120
QAATLFNSPM SHTELRPKVP YEVELTMDRI NATERLAASS LEKRKVEDFS ERLVNGGLKT  180
GSREIPENGN AGLNLDEQPS SYLNKSQQSS SFKDDSSSPH FGLAVSYASP NETNGQIGVS  240
GTPLRPPLQQ PLVKQFHGNL HNGVDSLGET QVRNGRPRVD PRGRGQLLPR YWPRFTDQDL  300
QQISADSNSV ITPLFEKMLS ASDAGRIGRL VLPKKCAEAY FPPISQPEGL PLKVQDSKGK  360
EWIFQFRFWP NNNSRMYVLE GVTPCIQNMQ LQAGDIVTFS RLEPEGKLVM GFRKASTNQA  420
SDQDSEATKA GTGVSTNGDL RLPGFLSIDQ AELADPSSWS KVDKSGYIAT EAIGAKSSVS  480
RKRKNTTLGS KSKRLKIENE DLIELKLTWE EAQGLLRPPP NNVPSVVVIE GYEFEEYERR  540
TRYDALDVLV YLVSTINFDV NSPDELVVLW GLRTLLNFDV FYNRKHQYLG SQQYLQLITW  600
GKSLKSLRTL LNFDVFYNRK HQYLGSQQYL QLITWGKSLK SLSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-632934162125B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1481495KRKNTTLGSKSKRLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920701e-40KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449227.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G41e-150Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLV4U9070.0V4U907_9ROSI; Uncharacterized protein
STRINGXP_006449227.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.11e-110VP1/ABI3-like 3