PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28337_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 209aa    MW: 23187.1 Da    PI: 7.576
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28337_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037152174123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C+k+F +   L  H + H
  Neem_28337_f_1 152 FECPFCDKVFDSGQALGGHKKIH 174
                     89*********999999999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.3E-7111128IPR007087Zinc finger, C2H2
SuperFamilySSF576674.58E-6148177No hitNo description
PfamPF139122.6E-9152174IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.011152179IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEKVRLATSS SSSLSNMQSY RSINREFLDL VSDDGESEAE SLKNPTKRRS KRRRRTIASV  60
VAAAAAPRPT EPESVSSVTE NIFTDEEVAM FLVMLAREKW PENEPVKEKE KRFPSYQALG  120
GHKASHKKMK IQQEGSSNSA GTDVIVLEQR IFECPFCDKV FDSGQALGGH KKIHFSYLPA  180
TKTSPNSGKT LIDLNLPAPP EDDSEVSQV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018840099.13e-48PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A067E3Y02e-50A0A067E3Y0_CITSI; Uncharacterized protein
STRINGXP_006421633.14e-49(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16232814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-27C2H2-like zinc finger protein