PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28233_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 152aa    MW: 17303.8 Da    PI: 8.7523
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28233_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-057798223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    kC +C++ F +  n++rHir+H
  Neem_28233_f_1 77 KCDKCSREFCSTINYRRHIRVH 98
                    7********************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.28476103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807899IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MPVTKLKSSN VTDVVKAEDG NDSLDTFIKQ AIGKEPLLSF SRNGDSSVQW IQLLQALDQQ  60
ELPGWPLLTP LKVQMQKCDK CSREFCSTIN YRRHIRVHHR LKKLDKDSTK NRDLLGAFWD  120
KLSVDEAKEV VSFKNAALEQ DACICGKYAR HS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892219.13e-81uncharacterized protein LOC110810369
TrEMBLA0A1U8NJH31e-77A0A1U8NJH3_GOSHI; uncharacterized protein LOC107948966 isoform X3
STRINGevm.model.supercontig_107.761e-80(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56802536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.14e-49C2H2-like zinc finger protein