PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28216_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TCP
Protein Properties Length: 368aa    MW: 42586.8 Da    PI: 8.0942
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28216_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.59.8e-381242652128
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasns 85 
                     ++kkdrhski+T++g+RdRR+Rls+e+a +fF Lqd LGfdk+skt+eWLl qa ++ik+l +              +++s c + +++s  +++
  Neem_28216_f_1 124 PTKKDRHSKIYTAKGLRDRRMRLSLEVAGKFFRLQDLLGFDKASKTVEWLLFQARAEIKKLEKRlaqmnyslnvdAKIASSTC-ECEDVSGFDKD 217
                     68**************************************************************9999999988655555566.55555555555 PP

             TCP  86 ssg.....kaaksaa.kskksqksaasalnlakesrakarararertre 128
                      ++       +k a  +++ +++++  +++la++ r karararert++
  Neem_28216_f_1 218 AIReniisT-EKPAVkEKQIRSSRKIIHRSLARDLRDKARARARERTEK 265
                     555666642.333331333334444457999999************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.5E-39125265IPR005333Transcription factor, TCP
PROSITE profilePS5136931.887126184IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.763249265IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MFPSNNYGLS NDLLSYNNDQ SIFHRPFIND ISPNSKQEES PLSVFHLPSP FIHYDLELED  60
HQFFLQQQYY DLLLEPQSLT TDDNTVPDIA KMADSSKPEV NELTKDCNKR NQTVRNQQIP  120
RKRPTKKDRH SKIYTAKGLR DRRMRLSLEV AGKFFRLQDL LGFDKASKTV EWLLFQARAE  180
IKKLEKRLAQ MNYSLNVDAK IASSTCECED VSGFDKDAIR ENIISTEKPA VKEKQIRSSR  240
KIIHRSLARD LRDKARARAR ERTEKLWSRR FDESKLADEA KAKDLSQLGS SSSFEAGKEL  300
GNHSSKALAE VEQPSTNDKH KLGNQEQIFD DDFVIMGKWN QASALSYLPN FEISQEHQFG  360
DFQFFEKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-13131184154Putative transcription factor PCF6
5zkt_B8e-13131184154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440913.21e-116transcription factor CYCLOIDEA
TrEMBLV4T1X81e-114V4T1X8_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006440913.11e-115(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-28TCP family protein