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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_28209_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | GeBP | ||||||||
Protein Properties | Length: 328aa MW: 37603.1 Da PI: 10.0382 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 131.4 | 3.4e-41 | 19 | 116 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 lfqrlwseeDeiv+L+G+id+ +k+g++p +d++af++++kks++++vsk qlv+KirrLKkK++++ +k k+g++++fsk+h+qk+++lskk+ Neem_28209_f_1 19 LFQRLWSEEDEIVVLKGMIDYSTKKGVDPNQDMNAFHDYIKKSLHVDVSKAQLVDKIRRLKKKYQNNLEKgLKKGEDQTFSKPHEQKAYDLSKKL 113 79********************************************************************99*********************** PP DUF573 96 Wgs 98 Wgs Neem_28209_f_1 114 WGS 116 *95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.5E-36 | 20 | 115 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
VDADPDEEKK PGEDTKKQLF QRLWSEEDEI VVLKGMIDYS TKKGVDPNQD MNAFHDYIKK 60 SLHVDVSKAQ LVDKIRRLKK KYQNNLEKGL KKGEDQTFSK PHEQKAYDLS KKLWGSESTS 120 GVIESAAKSN GKVRKNQNQR GNNKLLASLK AELTDGAKEG DNMEVDNNKE GNGLDKSVSV 180 KEKANFLFDK SFGVAGLEDF ILNNGLGMIG GVKRAELEER WKKLQIAQLE LFLQRNELMK 240 EQAKLILDAL KSSGERVLVI SDIGSLKKEF ITKMKTFPLN RSIRTPGSCW IKKYQRSDCI 300 RDFLYKRIRF REPLIKSSWL IFYQTVFT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467953.1 | 1e-138 | PREDICTED: mediator-associated protein 1 | ||||
TrEMBL | A0A067G7L7 | 1e-138 | A0A067G7L7_CITSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 3e-40 | DNA-binding storekeeper protein-related transcriptional regulator |