PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v1.0, v2.0, v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_28209_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GeBP

Protein Properties

Length: 328aa MW: 37603.1 Da PI: 10.0382

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_28209_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	131.4	3.4e-41	19	116	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 lfqrlwseeDeiv+L+G+id+ +k+g++p +d++af++++kks++++vsk qlv+KirrLKkK++++ +k k+g++++fsk+h+qk+++lskk+ Neem_28209_f_1 19 LFQRLWSEEDEIVVLKGMIDYSTKKGVDPNQDMNAFHDYIKKSLHVDVSKAQLVDKIRRLKKKYQNNLEKgLKKGEDQTFSKPHEQKAYDLSKKL 113 79******************************************************************99********************* PP DUF573 96 Wgs 98 Wgs Neem_28209_f_1 114 WGS 116 *95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.5E-36	20	115	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
VDADPDEEKK PGEDTKKQLF QRLWSEEDEI VVLKGMIDYS TKKGVDPNQD MNAFHDYIKK 60 SLHVDVSKAQ LVDKIRRLKK KYQNNLEKGL KKGEDQTFSK PHEQKAYDLS KKLWGSESTS 120 GVIESAAKSN GKVRKNQNQR GNNKLLASLK AELTDGAKEG DNMEVDNNKE GNGLDKSVSV 180 KEKANFLFDK SFGVAGLEDF ILNNGLGMIG GVKRAELEER WKKLQIAQLE LFLQRNELMK 240 EQAKLILDAL KSSGERVLVI SDIGSLKKEF ITKMKTFPLN RSIRTPGSCW IKKYQRSDCI 300 RDFLYKRIRF REPLIKSSWL IFYQTVFT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467953.1	1e-138	PREDICTED: mediator-associated protein 1
TrEMBL	A0A067G7L7	1e-138	A0A067G7L7_CITSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25210.1	3e-40	DNA-binding storekeeper protein-related transcriptional regulator