PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_28209_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GeBP
Protein Properties Length: 328aa    MW: 37603.1 Da    PI: 10.0382
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_28209_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573131.43.4e-4119116298
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 
                     lfqrlwseeDeiv+L+G+id+ +k+g++p +d++af++++kks++++vsk qlv+KirrLKkK++++ +k  k+g++++fsk+h+qk+++lskk+
  Neem_28209_f_1  19 LFQRLWSEEDEIVVLKGMIDYSTKKGVDPNQDMNAFHDYIKKSLHVDVSKAQLVDKIRRLKKKYQNNLEKgLKKGEDQTFSKPHEQKAYDLSKKL 113
                     79********************************************************************99*********************** PP

          DUF573  96 Wgs 98 
                     Wgs
  Neem_28209_f_1 114 WGS 116
                     *95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.5E-3620115IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
VDADPDEEKK PGEDTKKQLF QRLWSEEDEI VVLKGMIDYS TKKGVDPNQD MNAFHDYIKK  60
SLHVDVSKAQ LVDKIRRLKK KYQNNLEKGL KKGEDQTFSK PHEQKAYDLS KKLWGSESTS  120
GVIESAAKSN GKVRKNQNQR GNNKLLASLK AELTDGAKEG DNMEVDNNKE GNGLDKSVSV  180
KEKANFLFDK SFGVAGLEDF ILNNGLGMIG GVKRAELEER WKKLQIAQLE LFLQRNELMK  240
EQAKLILDAL KSSGERVLVI SDIGSLKKEF ITKMKTFPLN RSIRTPGSCW IKKYQRSDCI  300
RDFLYKRIRF REPLIKSSWL IFYQTVFT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467953.11e-138PREDICTED: mediator-associated protein 1
TrEMBLA0A067G7L71e-138A0A067G7L7_CITSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.13e-40DNA-binding storekeeper protein-related transcriptional regulator