PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27920_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 388aa    MW: 43801.2 Da    PI: 7.8713
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27920_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-05184200117
                     EEETTTTEEESSHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                     ++Cp C+ksF+r  nL+
  Neem_27920_f_1 184 FSCPVCTKSFNRYNNLQ 200
                     89***********9997 PP

2zf-C2H215.55.1e-05311333123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk+F  k + ++H +++
  Neem_27920_f_1 311 FMCRKCGKPFAVKGDWRTHEKNC 333
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.3E-4184199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.09E-6297331No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4298331IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MTDPYSNLFT GWFNFKPLHP NYSHFSSYST PHTYTNNITS SNSLIFQTQN FPPPPPSSPP  60
LKEALPLINC LSPRRQLEED QQEISSSSTE EDKINSNKDE SLIFSSTAEA ADDDVDPETV  120
TVALHIGLPN PSSNLSSRIS PPVDVTADKE EVVNLASGYS LDRLNKGQYW IPTPSQILIG  180
PTQFSCPVCT KSFNRYNNLQ TGIYEDHQEA ALQSAKNNLL HNAYVGTRIS VQKRTRLFKR  240
NPTLHMWGHG SQYRKGPDSL RGTQPTAMLR LPCYCCTQGC KHNIDHPRAK PLKDFRTLQT  300
HYKRKHGIKP FMCRKCGKPF AVKGDWRTHE KNCGKIWYCI CGSDFKHKRS LKDHIKAFGH  360
GHAAMGIECF EEDDEPASEI EHDGDSSM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482890.11e-167zinc finger protein WIP2-like
RefseqXP_024042271.11e-167zinc finger protein WIP2-like
SwissprotQ9SVY11e-119ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A1S8ADE91e-165A0A1S8ADE9_CITLI; C2H2-type zinc finger family protein
STRINGXP_006482890.11e-166(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]