PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27529_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 238aa    MW: 26137.9 Da    PI: 6.2932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27529_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001278100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C + F++   L  H+++H
  Neem_27529_f_1  78 YTCTFCRREFRSAQALGGHMNVH 100
                     9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.24E-775105No hitNo description
Gene3DG3DSA:3.30.160.607.5E-576103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-578101IPR007087Zinc finger, C2H2
SMARTSM003550.006678100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.15778105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MATELGLLSL SQLQQLASQS QQNQHQHQQN HSLASAASAS WMLNPKQAPQ DDDDSWEVRA  60
FAEDTGNIMG TTWPPRPYTC TFCRREFRSA QALGGHMNVH RRDRARLHQT RPPGSINMPT  120
SSSTSSSTVL IPTQEFATNG GLCLLYQLPN PNGVFTHTTM TACAIDSSST LLSISPYPPN  180
NLINFPVNPL ELNSSLCYST KDPSTSTNNN SNNVNNSNES AIEELDLELR LGHRSTPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A8e-1373100229superman protein
2l1o_A8e-1373100229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385648.11e-103transcriptional regulator SUPERMAN
TrEMBLA0A061G4961e-102A0A061G496_THECC; Palmate-like pentafoliata 1 transcription factor
STRINGEOY240171e-102(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-42C2H2 family protein