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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_27295_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | HB-other | ||||||||
Protein Properties | Length: 193aa MW: 21842.2 Da PI: 9.0202 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 4.9e-20 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Neem_27295_f_1 27 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85 5679*****************************************************97 PP | |||||||
2 | bZIP_1 | 20.1 | 1.4e-06 | 79 | 121 | 18 | 60 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 rr+R++ ++e +L+ +L+a Nk L +e+++l+k+v++l Neem_27295_f_1 79 RRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLA 121 9***************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.661 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-16 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.94E-18 | 26 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.68E-16 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 1.2E-17 | 28 | 85 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 2.85E-5 | 79 | 118 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.9E-4 | 83 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSFSLAEMMA VSSGCKDSNK MVMDNGKYVR YTPEQVEALE RLYHECPKPS SMRRQQLIRE 60 CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL 120 ATLATTDTSC ESVVTSGQHH LTPQHPPRDA SPAGLLSIAE ETLTEFLSKA TGTAVEWVQM 180 PGMKVSAVST IIF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM453607 | 3e-74 | AM453607.2 Vitis vinifera contig VV78X179473.2, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009378434.1 | 1e-115 | PREDICTED: homeobox-leucine zipper protein ATHB-15-like, partial | ||||
Refseq | XP_022729737.1 | 1e-114 | homeobox-leucine zipper protein ATHB-8 isoform X1 | ||||
Swissprot | Q39123 | 1e-103 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A061GKU3 | 1e-113 | A0A061GKU3_THECC; Class III HD-Zip protein 8 isoform 2 (Fragment) | ||||
TrEMBL | A0A0D2UGF7 | 1e-113 | A0A0D2UGF7_GOSRA; Uncharacterized protein | ||||
STRING | XP_009378434.1 | 1e-114 | (Pyrus x bretschneideri) | ||||
STRING | EOY29771 | 1e-113 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18074 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 1e-106 | homeobox gene 8 |