PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27295_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HB-other
Protein Properties Length: 193aa    MW: 21842.2 Da    PI: 9.0202
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27295_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.84.9e-202785357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Neem_27295_f_1 27 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85
                    5679*****************************************************97 PP

2bZIP_120.11.4e-06791211860
                     HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     rr+R++ ++e  +L+    +L+a Nk L +e+++l+k+v++l 
  Neem_27295_f_1  79 RRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLA 121
                     9***************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.6612286IPR001356Homeobox domain
SMARTSM003895.3E-162490IPR001356Homeobox domain
SuperFamilySSF466893.94E-182690IPR009057Homeodomain-like
CDDcd000863.68E-162787No hitNo description
PfamPF000461.2E-172885IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-192982IPR009057Homeodomain-like
CDDcd146862.85E-579118No hitNo description
Gene3DG3DSA:1.20.5.1705.9E-483123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MSFSLAEMMA VSSGCKDSNK MVMDNGKYVR YTPEQVEALE RLYHECPKPS SMRRQQLIRE  60
CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL  120
ATLATTDTSC ESVVTSGQHH LTPQHPPRDA SPAGLLSIAE ETLTEFLSKA TGTAVEWVQM  180
PGMKVSAVST IIF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4536073e-74AM453607.2 Vitis vinifera contig VV78X179473.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378434.11e-115PREDICTED: homeobox-leucine zipper protein ATHB-15-like, partial
RefseqXP_022729737.11e-114homeobox-leucine zipper protein ATHB-8 isoform X1
SwissprotQ391231e-103ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A061GKU31e-113A0A061GKU3_THECC; Class III HD-Zip protein 8 isoform 2 (Fragment)
TrEMBLA0A0D2UGF71e-113A0A0D2UGF7_GOSRA; Uncharacterized protein
STRINGXP_009378434.11e-114(Pyrus x bretschneideri)
STRINGEOY297711e-113(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1807459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.11e-106homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]