PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_27114_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 111aa    MW: 13159.4 Da    PI: 10.0787
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_27114_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.6e-066284123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC +C+k +  +s+ k H++t+
  Neem_27114_f_1 62 WKCDKCSKKYAVQSDWKAHQKTC 84
                    58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-64992No hitNo description
Gene3DG3DSA:3.30.160.604.9E-65083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MALDWKLFLK IYNLRQIHIY NPYMRVYICP EPSCVHHNPA RALGDLTGIK KHFSRKHGEK  60
KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDRGTIFSRL ILNPSIEHMH A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-215899344Zinc finger protein JACKDAW
5b3h_F2e-215899344Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197559.11e-51PREDICTED: protein indeterminate-domain 2-like
RefseqXP_028073987.12e-51zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ8RWX74e-46IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A1R3KHT44e-50A0A1R3KHT4_9ROSI; Uncharacterized protein
TrEMBLA0A1U8NUW49e-50A0A1U8NUW4_GOSHI; protein indeterminate-domain 2-like
TrEMBLA0A2P5YNG61e-49A0A2P5YNG6_GOSBA; Uncharacterized protein
STRINGXP_006480107.13e-50(Citrus sinensis)
STRINGEOX949913e-50(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.22e-37indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-AvendaƱo E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]