PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26948_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 247aa    MW: 27191.4 Da    PI: 6.6722
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26948_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002695117123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  Neem_26948_f_3  95 FSCNYCRRKFYSSQALGGHQNAH 117
                     89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.99E-693123No hitNo description
PROSITE profilePS5015711.38595122IPR007087Zinc finger, C2H2
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLQANCNFES ENDSEASSQV ASNISAQEAS PDRTKDTNSS CLTNIVKLNP DQGPLSLDLT  60
LQFKSNDIES KGTGESSGEV AAAAQTPAAT IPRVFSCNYC RRKFYSSQAL GGHQNAHKRE  120
RTMAKRAMRM GIFSDRYTSL ASLPLHGSAF RSLGIKAHAA VHQGIIQQQR PPDMRRVARF  180
EQGYFGMPMF VEDDDVDLFW PGSFRQIGEE VRSNPALQLA ENSNMNFVAM PPEPRTDSSA  240
PDLTLKL
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448103.11e-151zinc finger protein 4
RefseqXP_006448107.11e-151zinc finger protein 4
RefseqXP_006469288.11e-151zinc finger protein 4
RefseqXP_006469289.11e-151zinc finger protein 4
RefseqXP_006469290.11e-151zinc finger protein 4
RefseqXP_006469293.11e-151zinc finger protein 4
RefseqXP_006469294.11e-151zinc finger protein 4
RefseqXP_015382847.11e-151zinc finger protein 4
RefseqXP_024047894.11e-151zinc finger protein 4
RefseqXP_024951013.11e-151zinc finger protein 4
RefseqXP_024951014.11e-151zinc finger protein 4
RefseqXP_024951015.11e-151zinc finger protein 4
RefseqXP_024951016.11e-151zinc finger protein 4
RefseqXP_024951017.11e-151zinc finger protein 4
RefseqXP_024951018.11e-151zinc finger protein 4
RefseqXP_024951019.11e-151zinc finger protein 4
RefseqXP_024951020.11e-151zinc finger protein 4
RefseqXP_024951021.11e-151zinc finger protein 4
RefseqXP_024951022.11e-151zinc finger protein 4
RefseqXP_024951023.11e-151zinc finger protein 4
SwissprotQ392631e-49ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A067F4031e-150A0A067F403_CITSI; Uncharacterized protein
TrEMBLV4UB171e-150V4UB17_9ROSI; Uncharacterized protein
STRINGXP_006469288.11e-150(Citrus sinensis)
STRINGXP_006448099.11e-150(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66722643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.17e-52zinc finger protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]