PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26784_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 188aa    MW: 21128.4 Da    PI: 8.7212
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26784_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.8e-1793173187
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     f+k ++ps+v+   +l lpkkf+++h  k  +++ + lede+g ++e ++     +  + l++GW++F   ++L egD++vF+l++ 
  Neem_26784_f_1  93 FIKCMLPSHVSGGFWLGLPKKFCTDHLPK--KDTIIALEDENGHEYETNY--LAEK--IGLSGGWRGFSMVHKLVEGDVLVFHLIRP 173
                     89************************533..5679***************..4444..44***********************9874 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.8E-1987176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-2188176IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-2591172No hitNo description
PfamPF023625.1E-1593173IPR003340B3 DNA binding domain
SMARTSM010194.5E-1893179IPR003340B3 DNA binding domain
PROSITE profilePS5086311.53393188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MAIAPNERES SSDSPSEVKR ARPPIKKENM LDSKKVICSG PENSKCNATV ICSSEKRKRA  60
TYDNLYDNEE TKSAVMMQAT HVQANLAPEF PSFIKCMLPS HVSGGFWLGL PKKFCTDHLP  120
KKDTIIALED ENGHEYETNY LAEKIGLSGG WRGFSMVHKL VEGDVLVFHL IRPFKFKKKK  180
KAEALVIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024035070.17e-75B3 domain-containing protein Os01g0234100 isoform X2
TrEMBLA0A2H5MX918e-67A0A2H5MX91_CITUN; Uncharacterized protein (Fragment)
STRINGXP_006423042.17e-65(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16718911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-40B3 family protein