PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26620_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 398aa    MW: 43646.7 Da    PI: 10.5828
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26620_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.97.3e-27290342354
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYeg 54 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYe 
  Neem_26620_f_1 290 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPMMLIVTYEV 342
                     99************************988**********************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.0E-18241286IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.6E-28277343IPR003657WRKY domain
PROSITE profilePS5081126.877283345IPR003657WRKY domain
SuperFamilySSF1182901.27E-22286341IPR003657WRKY domain
SMARTSM007742.1E-29288348IPR003657WRKY domain
PfamPF031061.8E-22290342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAVELMMGYG CGDSFTAAAK MEDNAVREAA SAGMQSIGEF IRLLSRSQVP DGQQRQYKEA  60
TSSSTNLEPD KEIKVAAEVA VNNFKKVISL LGRPRTGHAR FRRAPVSPPP PPPVIPQKDQ  120
KHVQETGPSV QSANHPSKEQ ASAFKVYCPT PVHRLPPLPH NHISHQVHKT PMMATKSGFT  180
ERNDGPSTIN FSASPQLSAA NSFMSSLTGD TDSIQPSFSS GFQFTTPSSA GKPPLSSSSL  240
KRKCNSLDDA ALKCSSSSGR CHCSKKRKSR VKRVIRVPAI SSKMADIPPD DYSWRKYGQK  300
PIKGSPHPRG YYKCSSVRGC PARKHVERAL DDPMMLIVTY EVSANSIQRP ERALLPERKE  360
SHPSKAGKVG RRKIEAKQSV PCTDSQRRCW ALSTRRSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-18276341266WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473278.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-114WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A067H8Z40.0A0A067H8Z4_CITSI; Uncharacterized protein
STRINGXP_006473278.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.15e-86WRKY DNA-binding protein 7