PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26458_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family YABBY
Protein Properties Length: 208aa    MW: 23447.2 Da    PI: 6.644
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26458_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY146.13.5e-45415922169
           YABBY  22 lavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprv 112
                     l vsvP +sl++vvtvrCGhCtsllsvn++kas    +lla+ s+ +e+ kee+ +e+ +++++ +    +  ++s +++ + +s n+  +    
  Neem_26458_f_1   4 LKVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASfvplHLLASLSR-NEDPKEEVCKEEVHTDQKANRLSPSVPTSSDNEEEHAVSVNHIVNK--- 94 
                     78****************************999778788888887.6777777777766666666666655555555555555555544333... PP

           YABBY 113 ppvirPPekrqrvPsaynrfik.........eeiqrikasnPdishreafsaaaknWahfPkihfg 169
                      p    Pekrqr+Psayn fik         eei+r+k++nP+++hreafs+aaknWahfP+i ++
  Neem_26458_f_1  95 -PFLTAPEKRQRAPSAYNHFIKnshvdthdrEEIRRLKTENPNMAHREAFSTAAKNWAHFPPIQYK 159
                     .35677***************87777777778******************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.7E-454158IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MYSLKVSVPC SSLSMVVTVR CGHCTSLLSV NMMKASFVPL HLLASLSRNE DPKEEVCKEE  60
VHTDQKANRL SPSVPTSSDN EEEHAVSVNH IVNKPFLTAP EKRQRAPSAY NHFIKNSHVD  120
THDREEIRRL KTENPNMAHR EAFSTAAKNW AHFPPIQYKG GGESCGQEEE NPTWNSEEEE  180
ATEVHVEGNG FCERKAPRHS LRAKTPFE
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483897.12e-92axial regulator YABBY 4
SwissprotQ9LDT31e-54YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A1R3I6W46e-83A0A1R3I6W4_COCAP; YABBY protein
STRINGXP_006483897.16e-92(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80442740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.19e-55YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]