PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_26425_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 569aa    MW: 64524.6 Da    PI: 4.97
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_26425_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.46.3e-1916113195
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                     f+k+l++sdv++++r++lpkk ae+h    +  ++e++ +++ d++g  +W++k+++  +++s++yvl+ ++ +Fv+ +gL+ gDf++ +   + 
  Neem_26425_f_1  16 FQKELKNSDVSSLRRMILPKKAAEAHlpilE--SKEGIFISMDDLDGlHVWSFKYRFwpNNNSRMYVLE-NTGDFVNTHGLQLGDFIIVYQ--Dn 105
                     99**************************644..557899********9*******9989999999***9.******************993..33 PP

                     SEE..EEE CS
              B3  88 sefelvvk 95 
                     +++++v++
  Neem_26425_f_1 106 QNQNYVIQ 113
                     66666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-278121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-2514116No hitNo description
SuperFamilySSF1019364.32E-2114113IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.82716118IPR003340B3 DNA binding domain
SMARTSM010195.0E-1916118IPR003340B3 DNA binding domain
PfamPF023621.0E-1516114IPR003340B3 DNA binding domain
SuperFamilySSF1182034.32E-133194568IPR004907ATPase, V1 complex, subunit C
CDDcd147858.70E-149199566IPR004907ATPase, V1 complex, subunit C
PfamPF032232.4E-123199562IPR004907ATPase, V1 complex, subunit C
Gene3DG3DSA:1.20.1460.102.6E-60235356No hitNo description
Gene3DG3DSA:3.30.70.1009.4E-33357445No hitNo description
Gene3DG3DSA:1.20.1460.102.6E-60446506No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0009826Biological Processunidimensional cell growth
GO:0015991Biological ProcessATP hydrolysis coupled proton transport
GO:0043255Biological Processregulation of carbohydrate biosynthetic process
GO:0000221Cellular Componentvacuolar proton-transporting V-type ATPase, V1 domain
GO:0000325Cellular Componentplant-type vacuole
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0046961Molecular Functionproton-transporting ATPase activity, rotational mechanism
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MSIFKVIDPN RLRFLFQKEL KNSDVSSLRR MILPKKAAEA HLPILESKEG IFISMDDLDG  60
LHVWSFKYRF WPNNNSRMYV LENTGDFVNT HGLQLGDFII VYQDNQNQNY VIQAKKASDQ  120
DMYTNFTSDS VSDILLNDYE VNRSSSFYVN YPMAEDTGLS FIYDTTTFSN DSPLDFLGGS  180
LTSYSREKTQ SGPEMASRYW VVSLPVQNSA STLGNQLQEQ ISKHSFDTPL YRFNIPNLRV  240
GTLDSLLALS DDLLKSNSFV EGVSHKIRRQ IEDLEKLSGT ESSSLTVDGV PVDSYLTRFV  300
WDEAKYPTMS PLREIVDAIH TLVAKIEDDL KVRVAEYNNV RSQLNAINRK QSGSLAVRDL  360
SNLVKPEDII TSEHLVTLLA VVPKYSQKDW LASYETLTSY VVPRSTKQLY EDNEYALYTV  420
TLFGRVADNF RIAAREKGFQ IRDFEYSPEA QESRKQELER LVNDQESLKT SLLNWCYTSY  480
GEVFSSWMHF CAVRIFAESI LRYGLPPNFL ACVLAPPVKS EKKVRSILEG LSGSANSAYW  540
KSEDDVGGMA ALGGDADGHP YVSFTINLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1u7l_A3e-6123356848392Vacuolar ATP synthase subunit C
3j9t_O3e-6123356848392V-type proton ATPase subunit C
3j9u_O3e-6123356848392V-type proton ATPase subunit C
3j9v_O3e-6123356848392V-type proton ATPase subunit C
5vox_O3e-6123356848392V-type proton ATPase subunit C
5voy_O3e-6123356848392V-type proton ATPase subunit C
5voz_O3e-6123356848392V-type proton ATPase subunit C
6o7v_O3e-6123356848392V-type proton ATPase subunit C
6o7w_O3e-6123356848392V-type proton ATPase subunit C
6o7x_O3e-6123356848392V-type proton ATPase subunit C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSubunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2170374e-44AC217037.1 Populus trichocarpa clone POP049-G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446960.10.0V-type proton ATPase subunit C
RefseqXP_006446962.10.0V-type proton ATPase subunit C
RefseqXP_006468875.10.0V-type proton ATPase subunit C
RefseqXP_006468876.10.0V-type proton ATPase subunit C
RefseqXP_006468877.10.0V-type proton ATPase subunit C
SwissprotQ9SDS70.0VATC_ARATH; V-type proton ATPase subunit C
TrEMBLA0A067E0G20.0A0A067E0G2_CITSI; V-type proton ATPase subunit C
TrEMBLA0A2H5Q4L70.0A0A2H5Q4L7_CITUN; V-type proton ATPase subunit C
TrEMBLV4U2W40.0V4U2W4_9ROSI; V-type proton ATPase subunit C
STRINGXP_006468875.10.0(Citrus sinensis)
STRINGXP_006446960.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.14e-75B3 family protein
Publications ? help Back to Top
  1. Schumacher K, et al.
    The Arabidopsis det3 mutant reveals a central role for the vacuolar H(+)-ATPase in plant growth and development.
    Genes Dev., 1999. 13(24): p. 3259-70
    [PMID:10617574]
  2. Sze H,Schumacher K,Müller ML,Padmanaban S,Taiz L
    A simple nomenclature for a complex proton pump: VHA genes encode the vacuolar H(+)-ATPase.
    Trends Plant Sci., 2002. 7(4): p. 157-61
    [PMID:11950611]
  3. Hong-Hermesdorf A,Brüx A,Grüber A,Grüber G,Schumacher K
    A WNK kinase binds and phosphorylates V-ATPase subunit C.
    FEBS Lett., 2006. 580(3): p. 932-9
    [PMID:16427632]