PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_25545_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 652aa    MW: 70794.9 Da    PI: 7.7567
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_25545_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY55.11.5e-17275312137
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                     ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+
  Neem_25545_f_2 275 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQ 312
                     58***************************99******7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-17260312IPR003657WRKY domain
SuperFamilySSF1182907.72E-16268312IPR003657WRKY domain
PROSITE profilePS5081118.223270312IPR003657WRKY domain
SMARTSM007741.3E-14275334IPR003657WRKY domain
PfamPF031062.2E-15276312IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MEENRAAAME DIFRRSGRRV TVDVDEEKKA ADSAADPEEI VVKIGKKRLH NENNDTIPSS  60
PEQKHLSSGK QQLDLTNAKG SSLGPNSRPS SSSQKEQDDQ LESARAEMGE VRQENQRLKM  120
YLDRIMKDYQ TLQMQFINIV QQESKKSTDR SNDHEQEIEE PEFVSLSLGR FSSDSRKDDN  180
KNKTSSQGKE DEHDKEGLSL ALDCKFEASK SDANESLPNP SPAHSSEEPK DDTGQTWPPS  240
KVLKTIRSGD DEILQQSQVK KTRVSVRARC DTPTMNDGCQ WRKYGQKIAK GNPCPRAYYR  300
CTVAPSCPVR KQECFFGISG AKMCRRHVDL NHHLRRNPQP PTSCFRHGDG FHHFGSCDNH  360
PLPVSATAMA STTSAAASML LSGASSSSLP GSSAPSATIP GASNLHGLNF YMSDNSKSKQ  420
YYLPNSSLST SPSHSTITLD LTTNTPSSSS SHFSTFTSNF PPAPRYSSAN LNFSSSESSS  480
NLLWSNGLLS YSNSSTQPYI KNQIGSLNLG RQPLENVYQS FMQKNNPTLP EQSLPPDTIA  540
AATKAITADP SFQSALAAAL KSIIGTGNSG PGGTNQVSGD NFGQKVKWGE QFPAASSHSE  600
TVKGSGCGSS YLNKSSATNS QPGSLIFLPP SLPFSASKSA SASPSDNREH TN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037253.20.0PREDICTED: probable WRKY transcription factor 61
TrEMBLA0A061G4200.0A0A061G420_THECC; WRKY DNA-binding protein 72, putative
STRINGEOY217540.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-49WRKY DNA-binding protein 72