PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_25400_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 415aa    MW: 47287.2 Da    PI: 8.7295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_25400_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-05173196123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C  Cg++F +++ L++H +  H
  Neem_25400_f_1 173 YLCRVCGRRFYTNEKLVNHFKQiH 196
                     56*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.7E-7152197IPR029060PIN domain-like
SuperFamilySSF576673.03E-5170199No hitNo description
PROSITE profilePS5015712.154173201IPR007087Zinc finger, C2H2
PROSITE patternPS000280175196IPR007087Zinc finger, C2H2
CDDcd061675.21E-16190325No hitNo description
PfamPF019365.0E-7245325IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10104.7E-7248313IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGEANRFNPI SQGFPKFHNI CNTANFTSLK SLNPLISFSR SFHLGSQNPL STLAPEHAHD  60
NVGIFWDLDN KPPISVPPFE AAIKLKKSIS SFGVVRYMVA YANSHAFSYV PQVVAAIKLK  120
KSISSFGVVR YMVAYANSHA FSYVPQVVRE QRKERKLLNQ LENKGVIKPA EPYLCRVCGR  180
RFYTNEKLVN HFKQIHEREQ KKRLNQIESA RGKRRVHLVA KYSMKMEKYK RAARDVVTPK  240
VGYGLADELK RAGFWVRTVC DKPQAADVAL RDHMVDMMDK RRVECLVLVS DDSDFVEVLK  300
EAKLRCLKTV VVGDINDGAL KRVADAGFCW RDILMGKAKK EALSVVDKWK DQDILKMLEW  360
KYNPEVEKNA CDWDDDESED ADIDNIAGAN DAQCMQKEDS GVWWELESSD VDETS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440402.10.0uncharacterized protein LOC18046927
TrEMBLV4TJU60.0V4TJU6_9ROSI; Uncharacterized protein
STRINGXP_006440402.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-142C2H2 family protein