PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_25179_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 217aa    MW: 24558.6 Da    PI: 7.2593
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_25179_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.22.3e-101570560
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60
                    kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l   +     l 
  Neem_25179_f_1 15 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTDLS 70
                    9*****************************************99987776666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.2E-161175IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.7951376IPR004827Basic-leucine zipper domain
PfamPF001703.4E-91572IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.9E-101570No hitNo description
SuperFamilySSF579594.29E-111567No hitNo description
CDDcd147033.47E-231665No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDPDKLAELW TVDPKRAKRI LANRQSAARS KERKARYISE LERKVQTLQT EATTLSAQLT  60
LFQRDTTDLS TENTELKLRL QAMEQQAQLR DALNEALKKE VERLKIATGE IMTPTDTYNF  120
GMHHIPYNQS LFYPHQPQPG TGDPQNVQMQ QFHSFQPNMS SAPHQPMLPT ANSHAFSEML  180
QQDPLGRLQG LDINGRNTHL VKSEGPSISA SESSSTF
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435914.11e-133bZIP transcription factor 18
RefseqXP_006486172.11e-133bZIP transcription factor 18
SwissprotO228733e-80BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A067DWF71e-132A0A067DWF7_CITSI; Uncharacterized protein
STRINGXP_006486172.11e-132(Citrus sinensis)
STRINGXP_006435914.11e-132(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40422757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.19e-80bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]