PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24377_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 196aa    MW: 21587.8 Da    PI: 6.3576
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24377_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000362850123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C++ Fs+   L  H++ H
  Neem_24377_f_3 28 YDCTFCKRGFSNAQALGGHMNIH 50
                    88*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-42654IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.74E-62654No hitNo description
PROSITE profilePS5015711.3442855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEADQPSQEN SDQHGTSDDQ AASPIRSYDC TFCKRGFSNA QALGGHMNIH RKDKAELKQA  60
AAAATSNKSN QPPFDIWKIR ASYSPISTNR IRQSMEVKGT AQEISATQWR PWIPGEENDA  120
TESDKIFQLG PVRQLPLFVE RPFRIHQNPV PGTQVHAGGA EKDLSSSSSE SGLDLELRLG  180
LDPQESTSST GTKKFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015388797.14e-63transcriptional regulator TAC1
TrEMBLA0A067FTW81e-61A0A067FTW8_CITSI; Uncharacterized protein
TrEMBLA0A2H5NCW41e-61A0A2H5NCW4_CITUN; Uncharacterized protein
STRINGXP_006424902.19e-62(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-15C2H2 family protein