PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_24330_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family G2-like
Protein Properties Length: 303aa    MW: 33418.9 Da    PI: 7.9259
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_24330_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.73.9e-313285154
         G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                    kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQ  R
  Neem_24330_f_1 32 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQVQR 85
                    79*************************************************877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-292985IPR009057Homeodomain-like
PROSITE profilePS5129413.3462989IPR017930Myb domain
SuperFamilySSF466892.15E-143186IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-223286IPR006447Myb domain, plants
PfamPF002493.0E-73483IPR001005SANT/Myb domain
PfamPF143797.2E-1376108IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010088Biological Processphloem development
GO:0010089Biological Processxylem development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MFQHKKPSSM NSHDRTMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDKATP  60
KTIMRVMGVK GLTLYHLKSH LQVQRHLQLR IEAQGKYMQS ILEKACQTLT SGDNMPPGNY  120
KGIGNQGVPD VGTMKEFCPP LNFPPFQDLN IYGGDQLDLQ QNMDRPSLDG FMSNNENICL  180
GKKRPSAYSA SSGKSPLLWS DDLRLQETGT APSIGPQDDP FKGDQIQMAP PSSTELDSMS  240
DICETKPVLS GDSVGEKKFE GSGKLERPSP RRTPISTDHQ RMNTVMMNSG GMQQGRNSPY  300
GHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-183290260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-183290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-183290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-183290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-183290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-183290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-183290260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-183290260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-31AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021299509.11e-163myb family transcription factor APL isoform X2
SwissprotQ9SAK51e-81APL_ARATH; Myb family transcription factor APL
TrEMBLA0A061FIJ81e-161A0A061FIJ8_THECC; Homeodomain-like superfamily protein isoform 1
STRINGGorai.013G146200.11e-162(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50442750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.25e-84G2-like family protein
Publications ? help Back to Top
  1. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  4. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]