PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2428_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 259aa    MW: 29495.8 Da    PI: 4.7066
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2428_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY37.64.4e-121131591659
                    TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY  16 kgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    +g    +sY+rCt++   gC+++k+v+r +edp+ +e+tY ++H ++
  Neem_2428_f_1 113 RGCYKRKSYFRCTHKyeqGCRATKQVQRMDEDPQKFETTYISNHSCR 159
                    5666779*******99999*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.11793157IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-1298159IPR003657WRKY domain
SuperFamilySSF1182907.85E-12110159IPR003657WRKY domain
SMARTSM007742.6E-9110160IPR003657WRKY domain
PfamPF031062.7E-11113159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGSQLWSEKL SVNRKKIVKE LVQGKKFAEQ LQVLLQKGFE ADGSASAEDL VVKILRSFTQ  60
TLSVLSSCDD DRVSDDQNLL QQAASCNVSS FSDDRKSEDS GHSMKRPMTK DRRGCYKRKS  120
YFRCTHKYEQ GCRATKQVQR MDEDPQKFET TYISNHSCRD IISFPQIITG SDPWSSTVST  180
DSYVVSMPTE VKQECKEDTT SDDLSDNLSS LDHIMWEDFM SLQSSEPAPM VSLQIGSREY  240
SEMGDFGQEF NFDESHELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-1296159669OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435943.17e-85probable WRKY transcription factor 70
RefseqXP_006486150.17e-85probable WRKY transcription factor 70
TrEMBLA0A2H5PNJ42e-83A0A2H5PNJ4_CITUN; Uncharacterized protein
TrEMBLV4SN492e-83V4SN49_9ROSI; Uncharacterized protein
STRINGXP_006486150.13e-84(Citrus sinensis)
STRINGXP_006435943.13e-84(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.18e-28WRKY DNA-binding protein 70