PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_2427_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 253aa    MW: 28650 Da    PI: 8.4938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_2427_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00015072123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + F++   L  H+++H
  Neem_2427_f_1 50 YSCSFCRREFKSAQALGGHMNVH 72
                   99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.66E-64776No hitNo description
SMARTSM003550.00845072IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1575077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEQTQYWMWM KRQREILKSM NSFNDSWEER AFAEDAAGSL GGSAWPPRSY SCSFCRREFK  60
SAQALGGHMN VHRRDRARLK QSLSLHNEVH LHQNHNRNSL KLSDPKCPSE FCTSDCNRDQ  120
KSSPGNVVAS TLSPSRVFTQ ENLSSLEKTF LSISDTKPDH RQEKSPGEEG SNISISIGHH  180
GQDYVETNLS VGLNSVFSRD RPTGSCSDEA ISCKRTKIVA TSILPFFLAN DKYRLQKENL  240
DLELRLGDPP KVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-124572229superman protein
2l1o_A1e-124572229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022748260.12e-81probable transcriptional regulator RABBIT EARS
TrEMBLA0A1Q3BQK16e-81A0A1Q3BQK1_CEPFO; Zf-C2H2_6 domain-containing protein
STRINGEOY180863e-72(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-31C2H2 family protein